computablegenomix

Current Practices for Reference Gene Selection in RT-qPCR of Aspergillus: Outlook and Recommendations for the Future

Aspergillus is a genus of filamentous fungi with huge geographic and ecological distributions. Species inside this genus are clinically, agriculturally and biotechnologically related, resulting in growing curiosity in elucidating gene expression dynamics of key metabolic and physiological processes. Reverse-transcription quantitative Polymerase Chain Response (RT-qPCR) is a delicate and particular methodology of quantifying gene expression. A vital…

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computablegenomix

Direct RT-qPCR assay for SARS-CoV-2 variants of concern (Alpha, B.1.1.7 and Beta, B.1.351) detection and quantification in wastewater

Lower than a 12 months following the Extreme acute respiratory syndrome coronavirus 2 (SARS-CoV-2) outbreak, variants of concern have emerged within the type of variant Alpha (B.1.1.7, the British variant) and Beta (B.1.351, the South Africa variant). Resulting from their excessive infectivity and morbidity, it has grow to be clear that it’s essential to rapidly…

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computablegenomix

Comparison between Whatman FTA Elute Cards and Conventional Swab for the Detection of Pathogenic Enteric Bacteria Using an RT-qPCR Assay

The emergence of outbreaks of foodborne sickness is carefully related to meals contamination attributable to varied enteric pathogens, resembling Escherichia coli O157:H7, Listeria monocytogenes, Salmonella enterica serovar Enteritidis, and Staphylococcus aureus. The management of enteric pathogens poses a problem attributable to the truth that these pathogens can persist for an extended time frame within the surroundings. The fast detection of pathogenic…

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computablegenomix

Normalization of SARS-CoV-2 viral load via RT-qPCR provides higher-resolution data for comparison across time and between patients

The 2020 pandemic has reworked the world and elicited hundreds of research to raised perceive the SARS-CoV-2 virus. Viral load has been a typical measure to observe remedy therapies and affiliate viral dynamics with affected person outcomes; nevertheless, strategies related to viral load have diverse throughout research. These variations have the potential to sacrifice the…

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computablegenomix

Selection and Validation of Reference Genes for RT-qPCR Analysis in Aegilops tauschii (Coss.) under Different Abiotic Stresses

Aegilops tauschii (Coss.) is an aggressive and severe annual grass weed in China. Its DD genome is a wealthy supply of genetic materials and performs higher beneath totally different abiotic stress circumstances (salinity, drought, temperature, and so on.). Reverse-transcribed quantitative polymerase chain response (RT-qPCR) is a dependable method for reference gene choice and validation. This work…

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computablegenomix

Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data

Quantifying modifications in DNA and RNA ranges is crucial in quite a few molecular biology protocols. Quantitative actual time PCR (qPCR) strategies have developed to grow to be commonplace, nonetheless, information evaluation contains many time-consuming and cumbersome steps, which might result in errors and misinterpretation of knowledge. To handle these bottlenecks, now we have developed…

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A novel multiplex qPCR method for assessing the comparative lengths of telomeres

Background: The comparative size of telomeres is taken into account to be associated to ailments corresponding to most cancers, growing older, and cardiovascular ailments. qPCR is presently one of many primary strategies for detecting telomere size. Nevertheless, because of the distinctive sequence of telomeres (extremely repetitive six-base sequence), it’s tough to design primers and probes to…

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computablegenomix

Author Correction: A simple and robust real-time qPCR method for the detection of PIK3CA mutations

Background: Extreme acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has precipitated a pandemic of pneumonia spreading all over the world, resulting in critical threats to public well being and attracting monumental consideration. There’s an pressing want for delicate diagnostic testing implementation to regulate and handle SARS-CoV-2 in public well being laboratories. The quantitative reverse transcription PCR (RT-qPCR) assay is…

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computablegenomix

Validation of fetal microchimerism after pregnancy in the ovine using qPCR

Fetal microchimerism has been detected in maternal tissues of people and rodents throughout and after being pregnant. Research specializing in fetal DNA switch to maternal tissues in home animals are restricted, particularly in sheep. Fetal ram DNA was noticed within the maternal circulation throughout being pregnant, however it isn’t recognized if this chimerism persists in…

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computablegenomix

Ultra-sensitive AAV capsid detection by immunocapture-based qPCR following factor VIII gene transfer

Adeno-associated virus (AAV)-based gene remedy vectors are replication-incompetent and thus pose minimal threat for horizontal transmission or launch into the surroundings. In research with AAV5-FVIII-SQ (valoctocogene roxaparvovec), an investigational gene remedy for hemophilia A, residual vector DNA was detectable in blood, secreta, and excreta, nevertheless it remained unclear how lengthy structurally intact AAV5 vector capsids…

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