computablegenomix

Current Practices for Reference Gene Selection in RT-qPCR of Aspergillus: Outlook and Recommendations for the Future

Aspergillus is a genus of filamentous fungi with huge geographic and ecological distributions. Species inside this genus are clinically, agriculturally and biotechnologically related, resulting in growing curiosity in elucidating gene expression dynamics of key metabolic and physiological processes. Reverse-transcription quantitative Polymerase Chain Response (RT-qPCR) is a delicate and particular methodology of quantifying gene expression. A vital…

Read More
computablegenomix

Comparison of SARS-CoV-2 Detection by Rapid Antigen and by Three Commercial RT-qPCR Tests: A Study from Martin University Hospital in Slovakia

The worldwide pandemic of coronavirus illness 2019 (COVID-19) brought on by the extreme acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is having an incredible affect on the worldwide financial system, well being care programs and the lives of virtually all folks on this planet. The Central European nation of Slovakia reached one of many highest day…

Read More
computablegenomix

Normalization of SARS-CoV-2 viral load via RT-qPCR provides higher-resolution data for comparison across time and between patients

The 2020 pandemic has reworked the world and elicited hundreds of research to raised perceive the SARS-CoV-2 virus. Viral load has been a typical measure to observe remedy therapies and affiliate viral dynamics with affected person outcomes; nevertheless, strategies related to viral load have diverse throughout research. These variations have the potential to sacrifice the…

Read More
computablegenomix

Selection and Validation of Reference Genes for RT-qPCR Analysis in Aegilops tauschii (Coss.) under Different Abiotic Stresses

Aegilops tauschii (Coss.) is an aggressive and severe annual grass weed in China. Its DD genome is a wealthy supply of genetic materials and performs higher beneath totally different abiotic stress circumstances (salinity, drought, temperature, and so on.). Reverse-transcribed quantitative polymerase chain response (RT-qPCR) is a dependable method for reference gene choice and validation. This work…

Read More
computablegenomix

Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data

Quantifying modifications in DNA and RNA ranges is crucial in quite a few molecular biology protocols. Quantitative actual time PCR (qPCR) strategies have developed to grow to be commonplace, nonetheless, information evaluation contains many time-consuming and cumbersome steps, which might result in errors and misinterpretation of knowledge. To handle these bottlenecks, now we have developed…

Read More
computablegenomix

Rapid, early and accurate SARS-CoV-2 detection using RT-qPCR in primary care: a prospective cohort study (REAP-1)

Goals: We discover the significance of SARS-CoV-2 sentinel surveillance testing in major care throughout a regional COVID-19 outbreak in Austria. Design: Potential cohort examine. Setting: A single sentinel apply serving 22 829 individuals within the ski-resort of Schladming-Dachstein. Individuals: All 73 sufferers presenting with mild-to-moderate flu-like signs between 24 February and 03 April, 2020. Intervention: Nasopharyngeal sampling to detect SARS-CoV-2…

Read More

A novel multiplex qPCR method for assessing the comparative lengths of telomeres

Background: The comparative size of telomeres is taken into account to be associated to ailments corresponding to most cancers, growing older, and cardiovascular ailments. qPCR is presently one of many primary strategies for detecting telomere size. Nevertheless, because of the distinctive sequence of telomeres (extremely repetitive six-base sequence), it’s tough to design primers and probes to…

Read More
computablegenomix

Author Correction: A simple and robust real-time qPCR method for the detection of PIK3CA mutations

Background: Extreme acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has precipitated a pandemic of pneumonia spreading all over the world, resulting in critical threats to public well being and attracting monumental consideration. There’s an pressing want for delicate diagnostic testing implementation to regulate and handle SARS-CoV-2 in public well being laboratories. The quantitative reverse transcription PCR (RT-qPCR) assay is…

Read More
computablegenomix

Validation of fetal microchimerism after pregnancy in the ovine using qPCR

Fetal microchimerism has been detected in maternal tissues of people and rodents throughout and after being pregnant. Research specializing in fetal DNA switch to maternal tissues in home animals are restricted, particularly in sheep. Fetal ram DNA was noticed within the maternal circulation throughout being pregnant, however it isn’t recognized if this chimerism persists in…

Read More
computablegenomix

RT-qPCR Diagnostics: The “Drosten” SARS-CoV-2 Assay Paradigm

The reverse transcription quantitative polymerase chain reaction (RT-qPCR) is an established tool for the diagnosis of RNA pathogens. Its potential for automation has caused it to be used as a presence/absence diagnostic tool even when RNA quantification is not required. This technology has been pushed to the forefront of public awareness by the COVID-19 pandemic,…

Read More